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In this tutorial, FABIAN-variant is used to analyze variants from a whole genome sequencing (WGS) run using transcription factor flexible models (TFFMs).
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26.05.2022 · FABIAN-variant can be accessed at https://www. genecascade.org/fabian/. This website is free and open to all users without login requirement ...
FABIAN is a web-based application that uses TFFMs and PWMs to predict the degree to which DNA variants are likely to disrupt (or create) the binding sites of ...
05.07.2022 · The search can be restricted to variants in the vicinity of candidate genes. FABIAN-variant is available freely at https://www.genecascade.org/ ...
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Direct comparison of binding models generated by different methods. Depicted are AUC scores for TFs stored in both JASPAR (manually collected curated ...
09.06.2022 · However, the interaction between this SNP and our candidate gene PTBP2 was not significant (p value = 0.85) and FABIAN did not imply an effect ...
30.12.2023 · https://www.genecascade.org/fabian/, 35639768 ... Koboldt DC, Zhang Q, Larson DE, Shen D ... Link current as of Oct 2023: NA is not applicable.
01.07.2022 · This is the 20th edition of the Nucleic Acids Research Web Server Issue. Under normal circumstances, this would be an opportunity to ...